Enriched terms on cv. Thompson Seedless

GO accession	Term	adj. p-value	Directional response to GA3 treatment
GO:0051567	histone H3-K9 methylation	3.9e-14	Upregulated
GO:0007017	microtubule-based process	1.3e-13	Upregulated
GO:0051322	anaphase	1.3e-12	Upregulated
GO:0000911	cytokinesis by cell plate formation	2.9e-12	Upregulated
GO:0000910	cytokinesis	4.3e-12	Upregulated
GO:0008283	cell proliferation	2.6e-11	Upregulated
GO:0006306	DNA methylation	1.7e-10	Upregulated
GO:0006304	DNA modification	1.8e-10	Upregulated
GO:0000226	microtubule cytoskeleton organization	6.5e-10	Upregulated
GO:0007010	cytoskeleton organization	1.3e-09	Upregulated
GO:0071554	cell wall organization or biogenesis	1.4e-09	Upregulated
GO:0044036	cell wall macromolecule metabolic process	1.7e-09	Upregulated
GO:0043687	post-translational protein modification	2.0e-09	Upregulated
GO:0006275	regulation of DNA replication	3.1e-09	Upregulated
GO:0010389	regulation of G2/M transition of mitotic cell cycle	6.3e-09	Upregulated
GO:0006270	DNA replication initiation	7.9e-09	Upregulated
GO:0006793	phosphorus metabolic process	8.3e-09	Upregulated
GO:0006260	DNA replication	8.9e-09	Upregulated
GO:0051301	cell division	2.0e-08	Upregulated
GO:0035266	meristem growth	6.6e-08	Upregulated
GO:0040008	regulation of growth	7.8e-08	Upregulated
GO:0051052	regulation of DNA metabolic process	1.0e-07	Upregulated
GO:0016572	histone phosphorylation	3.8e-07	Upregulated
GO:0006261	DNA-dependent DNA replication	4.6e-07	Upregulated
GO:0007167	enzyme linked receptor protein signaling pathway	5.2e-07	Upregulated
GO:0070589	cellular component macromolecule biosynthetic process	5.2e-07	Upregulated
GO:0015979	photosynthesis	8.7e-07	Upregulated
GO:0006325	chromatin organization	1.1e-06	Upregulated
GO:0040029	regulation of gene expression, epigenetic	1.2e-06	Upregulated
GO:0050793	regulation of developmental process	1.2e-06	Upregulated
GO:0051239	regulation of multicellular organismal process	1.3e-06	Upregulated
GO:0048646	anatomical structure formation involved in morphogenesis	1.5e-06	Upregulated
GO:0019684	photosynthesis, light reaction	1.5e-06	Upregulated
GO:0006342	chromatin silencing	3.1e-06	Upregulated
GO:0006534	cysteine metabolic process	1.4e-05	Upregulated
GO:0065007	biological regulation	1.5e-05	Upregulated
GO:0010089	xylem development	2.2e-05	Upregulated
GO:0005976	polysaccharide metabolic process	5.7e-05	Upregulated
GO:0044085	cellular component biogenesis	6.9e-05	Upregulated
GO:0007049	cell cycle	7.2e-05	Upregulated
GO:0009832	plant-type cell wall biogenesis	7.7e-05	Upregulated
GO:0070925	organelle assembly	7.8e-05	Upregulated
GO:0009069	serine family amino acid metabolic process	8.3e-05	Upregulated
GO:0048449	floral organ formation	1.0e-04	Upregulated
GO:0048507	meristem development	1.3e-04	Upregulated
GO:0000271	polysaccharide biosynthetic process	2.0e-04	Upregulated
GO:0009698	phenylpropanoid metabolic process	2.2e-04	Upregulated
GO:0010087	phloem or xylem histogenesis	2.7e-04	Upregulated
GO:0050789	regulation of biological process	3.7e-04	Upregulated
GO:0043414	macromolecule methylation	3.9e-04	Upregulated
GO:0006996	organelle organization	5.3e-04	Upregulated
GO:0032259	methylation	5.7e-04	Upregulated
GO:0040007	growth	1.1e-03	Upregulated
GO:0006259	DNA metabolic process	1.4e-03	Upregulated
GO:0043412	macromolecule modification	1.6e-03	Upregulated
GO:0006730	one-carbon metabolic process	1.7e-03	Upregulated
GO:0070838	divalent metal ion transport	1.7e-03	Upregulated
GO:0032502	developmental process	5.0e-03	Upregulated
GO:0030003	cellular cation homeostasis	5.3e-03	Upregulated
GO:0005975	carbohydrate metabolic process	8.3e-03	Upregulated
GO:0019222	regulation of metabolic process	9.8e-03	Upregulated
GO:0008652	cellular amino acid biosynthetic process	1.0e-02	Upregulated
GO:0006740	NADPH regeneration	1.0e-02	Upregulated
GO:0009926	auxin polar transport	1.1e-02	Upregulated
GO:0019748	secondary metabolic process	1.2e-02	Upregulated
GO:0016128	phytosteroid metabolic process	1.2e-02	Upregulated
GO:0006084	acetyl-CoA metabolic process	1.2e-02	Upregulated
GO:0080090	regulation of primary metabolic process	1.2e-02	Upregulated
GO:0009813	flavonoid biosynthetic process	1.3e-02	Upregulated
GO:0006732	coenzyme metabolic process	1.4e-02	Upregulated
GO:0007389	pattern specification process	1.4e-02	Upregulated
GO:0008202	steroid metabolic process	1.7e-02	Upregulated
GO:0065001	specification of axis polarity	1.7e-02	Upregulated
GO:0006091	generation of precursor metabolites and energy	1.7e-02	Upregulated
GO:0046148	pigment biosynthetic process	1.9e-02	Upregulated
GO:0009309	amine biosynthetic process	2.0e-02	Upregulated
GO:0022900	electron transport chain	2.0e-02	Upregulated
GO:0006769	nicotinamide metabolic process	2.0e-02	Upregulated
GO:0022621	shoot system development	2.3e-02	Upregulated
GO:0006812	cation transport	2.4e-02	Upregulated
GO:0009812	flavonoid metabolic process	2.7e-02	Upregulated
GO:0009825	multidimensional cell growth	2.9e-02	Upregulated
GO:0065008	regulation of biological quality	2.9e-02	Upregulated
GO:0009637	response to blue light	3.0e-02	Upregulated
GO:0009820	alkaloid metabolic process	3.2e-02	Upregulated
GO:0010817	regulation of hormone levels	3.3e-02	Upregulated
GO:0043603	cellular amide metabolic process	3.4e-02	Upregulated
GO:0019438	aromatic compound biosynthetic process	3.4e-02	Upregulated
GO:0051186	cofactor metabolic process	3.6e-02	Upregulated
GO:0009809	lignin biosynthetic process	3.9e-02	Upregulated
GO:0010051	xylem and phloem pattern formation	4.0e-02	Upregulated
GO:0032501	multicellular organismal process	4.1e-02	Upregulated
GO:0006364	rRNA processing	4.4e-02	Upregulated
GO:0007349	cellularization	4.4e-02	Upregulated
GO:0006636	unsaturated fatty acid biosynthetic process	4.4e-02	Upregulated
GO:0000280	nuclear division	4.7e-02	Upregulated
GO:0010200	response to chitin	2.8e-16	Downregulated
GO:0009620	response to fungus	6.1e-16	Downregulated
GO:0006952	defense response	2.6e-14	Downregulated
GO:0010033	response to organic substance	2.1e-13	Downregulated
GO:0009607	response to biotic stimulus	1.0e-12	Downregulated
GO:0002376	immune system process	2.4e-12	Downregulated
GO:0006955	immune response	2.4e-12	Downregulated
GO:0034976	response to endoplasmic reticulum stress	1.2e-11	Downregulated
GO:0006950	response to stress	2.6e-11	Downregulated
GO:0012501	programmed cell death	6.9e-11	Downregulated
GO:0080134	regulation of response to stress	1.5e-10	Downregulated
GO:0050896	response to stimulus	1.6e-10	Downregulated
GO:0008219	cell death	1.8e-10	Downregulated
GO:0034050	host programmed cell death induced by symbiont	2.0e-10	Downregulated
GO:0009626	plant-type hypersensitive response	2.0e-10	Downregulated
GO:0009611	response to wounding	3.8e-10	Downregulated
GO:0006612	protein targeting to membrane	8.3e-10	Downregulated
GO:0009627	systemic acquired resistance	1.0e-09	Downregulated
GO:0031407	oxylipin metabolic process	1.3e-09	Downregulated
GO:0009694	jasmonic acid metabolic process	1.9e-09	Downregulated
GO:0048583	regulation of response to stimulus	2.9e-09	Downregulated
GO:0009605	response to external stimulus	4.6e-09	Downregulated
GO:0051704	multi-organism process	6.7e-09	Downregulated
GO:0033554	cellular response to stress	6.7e-09	Downregulated
GO:0023052	signaling	5.0e-08	Downregulated
GO:0009695	jasmonic acid biosynthetic process	2.1e-07	Downregulated
GO:0009719	response to endogenous stimulus	2.2e-07	Downregulated
GO:0051716	cellular response to stimulus	3.4e-07	Downregulated
GO:0031408	oxylipin biosynthetic process	4.3e-07	Downregulated
GO:0006986	response to unfolded protein	4.3e-07	Downregulated
GO:0009408	response to heat	5.4e-07	Downregulated
GO:0042538	hyperosmotic salinity response	1.0e-06	Downregulated
GO:0045730	respiratory burst	2.7e-05	Downregulated
GO:0044283	small molecule biosynthetic process	3.4e-05	Downregulated
GO:0009697	salicylic acid biosynthetic process	5.1e-05	Downregulated
GO:0009696	salicylic acid metabolic process	1.5e-04	Downregulated
GO:0052545	callose localization	2.4e-04	Downregulated
GO:0033037	polysaccharide localization	2.8e-04	Downregulated
GO:0006865	amino acid transport	3.1e-04	Downregulated
GO:0015837	amine transport	3.9e-04	Downregulated
GO:0006725	cellular aromatic compound metabolic process	6.8e-04	Downregulated
GO:0046394	carboxylic acid biosynthetic process	7.4e-04	Downregulated
GO:0032787	monocarboxylic acid metabolic process	9.1e-04	Downregulated
GO:0015849	organic acid transport	1.0e-03	Downregulated
GO:0009693	ethylene biosynthetic process	1.1e-03	Downregulated
GO:0010583	response to cyclopentenone	1.6e-03	Downregulated
GO:0050794	regulation of cellular process	1.8e-03	Downregulated
GO:0010035	response to inorganic substance	2.2e-03	Downregulated
GO:0009404	toxin metabolic process	3.7e-03	Downregulated
GO:0009407	toxin catabolic process	3.7e-03	Downregulated
GO:0042542	response to hydrogen peroxide	3.7e-03	Downregulated
GO:0009595	detection of biotic stimulus	7.0e-03	Downregulated
GO:0009644	response to high light intensity	7.0e-03	Downregulated
GO:0010150	leaf senescence	7.1e-03	Downregulated
GO:0006767	water-soluble vitamin metabolic process	9.2e-03	Downregulated
GO:0046482	para-aminobenzoic acid metabolic process	1.1e-02	Downregulated
GO:0019438	aromatic compound biosynthetic process	1.1e-02	Downregulated
GO:0006082	organic acid metabolic process	1.2e-02	Downregulated
GO:0006631	fatty acid metabolic process	1.3e-02	Downregulated
GO:0009642	response to light intensity	1.4e-02	Downregulated
GO:0006810	transport	1.4e-02	Downregulated
GO:0006820	anion transport	1.4e-02	Downregulated
GO:0042180	cellular ketone metabolic process	1.6e-02	Downregulated
GO:0006457	protein folding	1.7e-02	Downregulated
GO:0009628	response to abiotic stimulus	1.8e-02	Downregulated
GO:0050789	regulation of biological process	2.5e-02	Downregulated
GO:0051179	localization	2.6e-02	Downregulated
GO:0065007	biological regulation	2.9e-02	Downregulated
GO:0007568	aging	2.9e-02	Downregulated
GO:0043900	regulation of multi-organism process	3.5e-02	Downregulated
GO:0008152	metabolic process	4.1e-02	Downregulated
GO:0010310	regulation of hydrogen peroxide metabolic process	4.4e-02	Downregulated
GO:0006979	response to oxidative stress	4.6e-02	Downregulated